Genome assembly used for the atlas

LDECv5_genome_unmasked_mito.fasta. This genome has been reassembled from Yan et al. 2023 Sci Data by Shuqing Xu.

The former versions of the genome and annotation are available on the first CPB Atlas https://cpb-atlas.uni-mainz.de/media/genome_annotation/.

Gene prediction

LDECv5.gff3 This genome annotation has been made by Abhisek Chakraborty.

Proteome

LDECv5_pep.fa

Functional annotation

The functional annotation comprises a BLAST and an Interproscan annotations, GO terms and KEGG orthologs.
LDECv5_functional_annotation.txt

Complete table of expression values in transcript per million (TPM)

Note: This table contains two outlier samples which have not been included in the atlas: HF5 and YFB4.
Counts_tpm_filtered.txt

The correspondence between sample names and tissues or developmental stages is available in this table:
sample_name2sample_type.txt